• Bioinformatics 16
• Biology 5
• Biostatistics 7
• English 8
• Epidemiology 3
• Git 4
• Life 4
• Linux 2
• Machine Learning 8
• Other 2
• Plot 6
• Python 12
• R 14
• Statistics 1
• Study 13
• Websites 1

Bioinformatics

• Metabolic network analysis
• Enhancer Database
• Analysis flow of metabolomics data
• MetaboAnalyst
• Metabolomics Database and Tools
• Transcription Factor Database
• Cell Marker Database
• SNP Genotyping
• Exome sequencing
• TCGA Database
• Cancer Database
• Download reference genome and annotation
• Gene Structure
• KEGG usage
• Online tools for Bioinformatics
• Tools for Bioinformatics analysis

Biology

• Non-Coding RNAs
• Breast cancer PAM50 subtypes
• Dr. Steven Halls's breast cancer website
• Glucose feeds the TCA cycle via circulating lactate
• Metabolites

Biostatistics

• Seven deadly sins of statistics and how to avoid them
• Survival analysis --R code
• Survival analysis -- Theory
• Hazard Ratio
• Determine the optimal cut-point for continuous variables in survival analysis
• Youden Index/Cut-Off
• ROC curve calculation

English

• CHENYUAN Blog Homepage
• Tools--plagiarism checker and duplicate content finder
• Tools--English grammar and spelling check
• Commonly Confused Words
• English Writing Tips
• Structure the Paper
• Write Grant Proposal
• Rules for Numbers

Epidemiology

• Mendelian randomization
• Cancer prevention
• Clinic trail

Git

• Github
• Git branch
• Git Repository reset
• Git Repository init, add, commit, log, diff

Life

• the immortal life of henrietta lacks
• HPV Vaccination in Germany
• 蛊梦
• About life you should know earlier

Linux

• Send instant messages on linux server
• Use .htaccess to limit IP address

Machine Learning

• Logistic regression
• Penalized Regression Ridge Lasso Elastic net
• LASSO/Ridge/Elastic Net regression -- R codes
• LASSO/Ridge/Elastic Net regression -- Theory
• Cross Validation
• Machine Learning Routes
• STHDA - Machine learning essentials
• Compare and select machine learning models

Other

• Markdown here
• markdown rules

Plot

• Generate QR code
• Venn diagram
• ggedit
• Forest plot for cox model
• Star (Spider/Radar) plot
• Volcano plot

Python

• Machine Learning General Codes (R and Python)
• Python formatted output
• Class and Object
• Input and Output
• Functions and Modules
• Conditional statements and Loops
• Python Data Structure
• Python Operators and Expressions
• Python Overview
• Jupyter notebook 的安装与使用
• Anaconda installation
• Python Preparation

R

• data.table
• Extract webpage -- Example one
• Presentation, Report, Python in Rstudio
• R introduction
• tidyr
• dplyr
• tibble
• stringr
• Correlation analysis
• R control structures
• web scraping -- Regular Expression
• web scraping -- XPath
• web scraping -- XML
• web scraping -- HTML

Statistics

• Univariate and Multivariate Survival Analysis

Study

• Tips for writing paper in epidemiology
• Online Learning Websites
• Something I should know about journals
• Figures for publication
• Adobe Illustrator
• Multi-Omics Factor Analysis (MOFA)
• Keynote oncology clinical trials
• Data cleaning
• Online Toolkits
• Awesome websites
• Unfinished things
• Email writing skills
• writing skills(1)

Websites

• Extract webpage -- Example Two